API ReferenceΒΆ
- fitters
- Univariate models
- AalenJohansenFitter
- BreslowFlemingHarringtonFitter
- ExponentialFitter
ExponentialFitter
ExponentialFitter.cumulative_hazard_
ExponentialFitter.confidence_interval_cumulative_hazard_
ExponentialFitter.hazard_
ExponentialFitter.confidence_interval_hazard_
ExponentialFitter.survival_function_
ExponentialFitter.confidence_interval_survival_function_
ExponentialFitter.variance_matrix_
ExponentialFitter.median_survival_time_
ExponentialFitter.lambda_
ExponentialFitter.durations
ExponentialFitter.event_observed
ExponentialFitter.timeline
ExponentialFitter.entry
ExponentialFitter.cumulative_density_
ExponentialFitter.density_
ExponentialFitter.confidence_interval_cumulative_density_
ExponentialFitter.percentile()
- GeneralizedGammaFitter
GeneralizedGammaFitter
GeneralizedGammaFitter.cumulative_hazard_
GeneralizedGammaFitter.hazard_
GeneralizedGammaFitter.survival_function_
GeneralizedGammaFitter.cumulative_density_
GeneralizedGammaFitter.density_
GeneralizedGammaFitter.variance_matrix_
GeneralizedGammaFitter.median_survival_time_
GeneralizedGammaFitter.lambda_
GeneralizedGammaFitter.rho_
GeneralizedGammaFitter.alpha_
GeneralizedGammaFitter.durations
GeneralizedGammaFitter.event_observed
GeneralizedGammaFitter.timeline
GeneralizedGammaFitter.entry
GeneralizedGammaFitter.percentile()
- KaplanMeierFitter
KaplanMeierFitter
KaplanMeierFitter.survival_function_
KaplanMeierFitter.median_survival_time_
KaplanMeierFitter.confidence_interval_
KaplanMeierFitter.confidence_interval_survival_function_
KaplanMeierFitter.cumulative_density_
KaplanMeierFitter.confidence_interval_cumulative_density_
KaplanMeierFitter.durations
KaplanMeierFitter.event_observed
KaplanMeierFitter.timeline
KaplanMeierFitter.entry
KaplanMeierFitter.event_table
KaplanMeierFitter.cumulative_density_at_times()
KaplanMeierFitter.fit()
KaplanMeierFitter.fit_interval_censoring()
KaplanMeierFitter.fit_left_censoring()
KaplanMeierFitter.median_survival_time_
KaplanMeierFitter.plot()
KaplanMeierFitter.plot_cumulative_density()
KaplanMeierFitter.plot_cumulative_hazard()
KaplanMeierFitter.plot_hazard()
KaplanMeierFitter.plot_loglogs()
KaplanMeierFitter.plot_survival_function()
KaplanMeierFitter.survival_function_at_times()
- LogLogisticFitter
LogLogisticFitter
LogLogisticFitter.cumulative_hazard_
LogLogisticFitter.hazard_
LogLogisticFitter.survival_function_
LogLogisticFitter.cumulative_density_
LogLogisticFitter.density_
LogLogisticFitter.variance_matrix_
LogLogisticFitter.median_survival_time_
LogLogisticFitter.alpha_
LogLogisticFitter.beta_
LogLogisticFitter.durations
LogLogisticFitter.event_observed
LogLogisticFitter.timeline
LogLogisticFitter.entry
LogLogisticFitter.alpha_
LogLogisticFitter.beta_
LogLogisticFitter.median_survival_time_
LogLogisticFitter.percentile()
- LogNormalFitter
LogNormalFitter
LogNormalFitter.cumulative_hazard_
LogNormalFitter.hazard_
LogNormalFitter.survival_function_
LogNormalFitter.cumulative_density_
LogNormalFitter.density_
LogNormalFitter.variance_matrix_
LogNormalFitter.median_survival_time_
LogNormalFitter.mu_
LogNormalFitter.sigma_
LogNormalFitter.durations
LogNormalFitter.event_observed
LogNormalFitter.timeline
LogNormalFitter.entry
LogNormalFitter.median_survival_time_
LogNormalFitter.mu_
LogNormalFitter.percentile()
LogNormalFitter.sigma_
- MixtureCureFitter
MixtureCureFitter
MixtureCureFitter.cumulative_hazard_
MixtureCureFitter.cured_fraction_
MixtureCureFitter.hazard_
MixtureCureFitter.survival_function_
MixtureCureFitter.cumulative_density_
MixtureCureFitter.variance_matrix_
MixtureCureFitter.median_survival_time_
MixtureCureFitter.durations
MixtureCureFitter.event_observed
MixtureCureFitter.timeline
MixtureCureFitter.entry
MixtureCureFitter.percentile()
- NelsonAalenFitter
NelsonAalenFitter
NelsonAalenFitter.cumulative_hazard_
NelsonAalenFitter.confidence_interval_
NelsonAalenFitter.durations
NelsonAalenFitter.event_observed
NelsonAalenFitter.timeline
NelsonAalenFitter.entry
NelsonAalenFitter.event_table
NelsonAalenFitter.conditional_time_to_event_
NelsonAalenFitter.cumulative_hazard_at_times()
NelsonAalenFitter.fit()
NelsonAalenFitter.percentile()
NelsonAalenFitter.plot_hazard()
NelsonAalenFitter.smoothed_hazard_()
NelsonAalenFitter.smoothed_hazard_confidence_intervals_()
- PiecewiseExponentialFitter
PiecewiseExponentialFitter
PiecewiseExponentialFitter.cumulative_hazard_
PiecewiseExponentialFitter.hazard_
PiecewiseExponentialFitter.survival_function_
PiecewiseExponentialFitter.cumulative_density_
PiecewiseExponentialFitter.density_
PiecewiseExponentialFitter.variance_matrix_
PiecewiseExponentialFitter.median_survival_time_
PiecewiseExponentialFitter.lambda_i_
PiecewiseExponentialFitter.durations
PiecewiseExponentialFitter.event_observed
PiecewiseExponentialFitter.timeline
PiecewiseExponentialFitter.entry
PiecewiseExponentialFitter.breakpoints
- SplineFitter
SplineFitter
SplineFitter.cumulative_hazard_
SplineFitter.hazard_
SplineFitter.survival_function_
SplineFitter.cumulative_density_
SplineFitter.density_
SplineFitter.variance_matrix_
SplineFitter.median_survival_time_
SplineFitter.lambda_
SplineFitter.rho_
SplineFitter.durations
SplineFitter.event_observed
SplineFitter.timeline
SplineFitter.entry
SplineFitter.knot_locations
SplineFitter.n_knots
- WeibullFitter
WeibullFitter
WeibullFitter.cumulative_hazard_
WeibullFitter.hazard_
WeibullFitter.survival_function_
WeibullFitter.cumulative_density_
WeibullFitter.density_
WeibullFitter.variance_matrix_
WeibullFitter.median_survival_time_
WeibullFitter.lambda_
WeibullFitter.rho_
WeibullFitter.durations
WeibullFitter.event_observed
WeibullFitter.timeline
WeibullFitter.entry
WeibullFitter.lambda_
WeibullFitter.percentile()
WeibullFitter.rho_
- Regression models
- AalenAdditiveFitter
AalenAdditiveFitter
AalenAdditiveFitter.cumulative_hazards_
AalenAdditiveFitter.hazards_
AalenAdditiveFitter.confidence_intervals_
AalenAdditiveFitter.durations
AalenAdditiveFitter.event_observed
AalenAdditiveFitter.weights
AalenAdditiveFitter.concordance_index_
AalenAdditiveFitter.fit()
AalenAdditiveFitter.plot()
AalenAdditiveFitter.predict_cumulative_hazard()
AalenAdditiveFitter.predict_expectation()
AalenAdditiveFitter.predict_median()
AalenAdditiveFitter.predict_percentile()
AalenAdditiveFitter.predict_survival_function()
AalenAdditiveFitter.print_summary()
AalenAdditiveFitter.score()
AalenAdditiveFitter.smoothed_hazards_()
AalenAdditiveFitter.summary
- CRCSplineFitter
- CoxPHFitter
CoxPHFitter
CoxPHFitter.params_
CoxPHFitter.hazard_ratios_
CoxPHFitter.confidence_intervals_
CoxPHFitter.durations
CoxPHFitter.event_observed
CoxPHFitter.weights
CoxPHFitter.variance_matrix_
CoxPHFitter.strata
CoxPHFitter.standard_errors_
CoxPHFitter.log_likelihood_
CoxPHFitter.AIC_
CoxPHFitter.partial_AIC_
CoxPHFitter.baseline_hazard_
CoxPHFitter.baseline_cumulative_hazard_
CoxPHFitter.baseline_survival_
CoxPHFitter.summary
CoxPHFitter.plot_covariate_groups()
CoxPHFitter.plot_partial_effects_on_outcome()
CoxPHFitter.plot()
CoxPHFitter.predict_median()
CoxPHFitter.predict_expectation()
CoxPHFitter.predict_percentile()
CoxPHFitter.predict_survival_function()
CoxPHFitter.predict_partial_hazard()
CoxPHFitter.predict_log_partial_hazard()
CoxPHFitter.predict_cumulative_hazard()
CoxPHFitter.score()
CoxPHFitter.log_likelihood_ratio_test()
CoxPHFitter.compute_followup_hazard_ratios()
CoxPHFitter.fit()
CoxPHFitter.fit_interval_censoring()
CoxPHFitter.fit_left_censoring()
CoxPHFitter.plot_partial_effects_on_outcome()
CoxPHFitter.print_summary()
SemiParametricPHFitter
SemiParametricPHFitter.params_
SemiParametricPHFitter.hazard_ratios_
SemiParametricPHFitter.confidence_intervals_
SemiParametricPHFitter.durations
SemiParametricPHFitter.event_observed
SemiParametricPHFitter.weights
SemiParametricPHFitter.variance_matrix_
SemiParametricPHFitter.strata
SemiParametricPHFitter.standard_errors_
SemiParametricPHFitter.baseline_hazard_
SemiParametricPHFitter.baseline_cumulative_hazard_
SemiParametricPHFitter.baseline_survival_
SemiParametricPHFitter.concordance_index_
SemiParametricPHFitter.fit()
SemiParametricPHFitter.log_likelihood_ratio_test()
SemiParametricPHFitter.plot()
SemiParametricPHFitter.predict_cumulative_hazard()
SemiParametricPHFitter.predict_expectation()
SemiParametricPHFitter.predict_log_partial_hazard()
SemiParametricPHFitter.predict_median()
SemiParametricPHFitter.predict_partial_hazard()
SemiParametricPHFitter.predict_percentile()
SemiParametricPHFitter.predict_survival_function()
SemiParametricPHFitter.score()
SemiParametricPHFitter.summary
ParametricSplinePHFitter
- CoxTimeVaryingFitter
CoxTimeVaryingFitter
CoxTimeVaryingFitter.params_
CoxTimeVaryingFitter.hazard_ratios_
CoxTimeVaryingFitter.confidence_intervals_
CoxTimeVaryingFitter.event_observed
CoxTimeVaryingFitter.weights
CoxTimeVaryingFitter.variance_matrix_
CoxTimeVaryingFitter.strata
CoxTimeVaryingFitter.standard_errors_
CoxTimeVaryingFitter.baseline_cumulative_hazard_
CoxTimeVaryingFitter.baseline_survival_
CoxTimeVaryingFitter.fit()
CoxTimeVaryingFitter.log_likelihood_ratio_test()
CoxTimeVaryingFitter.plot()
CoxTimeVaryingFitter.predict_log_partial_hazard()
CoxTimeVaryingFitter.predict_partial_hazard()
CoxTimeVaryingFitter.print_summary()
CoxTimeVaryingFitter.summary
- GeneralizedGammaRegressionFitter
GeneralizedGammaRegressionFitter
GeneralizedGammaRegressionFitter.cumulative_hazard_
GeneralizedGammaRegressionFitter.hazard_
GeneralizedGammaRegressionFitter.survival_function_
GeneralizedGammaRegressionFitter.cumulative_density_
GeneralizedGammaRegressionFitter.density_
GeneralizedGammaRegressionFitter.variance_matrix_
GeneralizedGammaRegressionFitter.median_
GeneralizedGammaRegressionFitter.lambda_
GeneralizedGammaRegressionFitter.rho_
GeneralizedGammaRegressionFitter.alpha_
GeneralizedGammaRegressionFitter.durations
GeneralizedGammaRegressionFitter.event_observed
GeneralizedGammaRegressionFitter.timeline
GeneralizedGammaRegressionFitter.entry
- LogLogisticAFTFitter
LogLogisticAFTFitter
LogLogisticAFTFitter.params_
LogLogisticAFTFitter.confidence_intervals_
LogLogisticAFTFitter.durations
LogLogisticAFTFitter.event_observed
LogLogisticAFTFitter.weights
LogLogisticAFTFitter.variance_matrix_
LogLogisticAFTFitter.standard_errors_
LogLogisticAFTFitter.score_
LogLogisticAFTFitter.predict_expectation()
LogLogisticAFTFitter.predict_percentile()
- LogNormalAFTFitter
LogNormalAFTFitter
LogNormalAFTFitter.params_
LogNormalAFTFitter.confidence_intervals_
LogNormalAFTFitter.durations
LogNormalAFTFitter.event_observed
LogNormalAFTFitter.weights
LogNormalAFTFitter.variance_matrix_
LogNormalAFTFitter.standard_errors_
LogNormalAFTFitter.score_
LogNormalAFTFitter.predict_expectation()
LogNormalAFTFitter.predict_percentile()
- PiecewiseExponentialRegressionFitter
- WeibullAFTFitter
WeibullAFTFitter
WeibullAFTFitter.params_
WeibullAFTFitter.confidence_intervals_
WeibullAFTFitter.durations
WeibullAFTFitter.event_observed
WeibullAFTFitter.weights
WeibullAFTFitter.variance_matrix_
WeibullAFTFitter.standard_errors_
WeibullAFTFitter.score_
WeibullAFTFitter.predict_expectation()
WeibullAFTFitter.predict_percentile()
- AalenAdditiveFitter
- Univariate models
- utils
add_covariate_to_timeline()
concordance_index()
covariates_from_event_matrix()
datetimes_to_durations()
find_best_parametric_model()
group_survival_table_from_events()
k_fold_cross_validation()
median_survival_times()
qth_survival_time()
qth_survival_times()
restricted_mean_survival_time()
survival_events_from_table()
survival_table_from_events()
to_episodic_format()
to_long_format()
- statistics
- plotting
- datasets
load_c_botulinum_lag_phase()
load_canadian_senators()
load_dd()
load_dfcv()
load_diabetes()
load_g3()
load_gbsg2()
load_holly_molly_polly()
load_kidney_transplant()
load_larynx()
load_lcd()
load_leukemia()
load_lung()
load_lupus()
load_lymph_node()
load_lymphoma()
load_mice()
load_multicenter_aids_cohort_study()
load_nh4()
load_panel_test()
load_psychiatric_patients()
load_recur()
load_regression_dataset()
load_rossi()
load_stanford_heart_transplants()
load_static_test()
load_waltons()
- calibration